• Wenjie Shu, Hebing Chen, Xiaochen Bo, Shengqi Wang.(2011) Genome-wide analysis of the relationships between DNaseI HS, histone modifications, and gene expression reveals distinct modes of chromatin domains. Nucleic Acids Research (published online).

• Zhenpeng Li, Fei Li, Peng Li, Ming Ni, Shengqi Wang and Xiaochen Bo.(2011) Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network. BMC Systems Biology, 5:93.

• Yu,G., Li,F., Qin,Y., Bo,X., Wu,Y. and Wang,S. (2010) GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics, 26, 976-978.

• Li,Z.-P., Ying,D.-Q., Li,P., Li,F., Bo,X.-C. and Wang,S.-Q. (2010) Analysis of synonymous codon usage bias in 09H1N1. Virol Sin, 25, 329-340.

• Shu,W., Liu,M., Chen,H., Bo,X. and Wang,S. (2010) ARDesigner: A web-based system for allosteric RNA design. J Biotechnol, 150, 466-473.

• Li,F., Li,P., Xu,W., Peng,Y., Bo,X. and Wang,S. (2010) PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks. Bioinformatics, 26, 275-277.

• Wenjie Shu, Ming Ni, Xiaochen Bo*, Zhiqiang Zheng and Shengqi Wang*. EvoRSR: an integrated system for exploring evolution of RNA structural robustness. BMC Bioinformatics, 2009, 10:249.

• Yibo Wu†, Xiaochen Bo†, Lirong Yan, Hongwei Xie, Shengqi Wang. Design of 16S rRNA-based oligonucleotide array using multiple taxon-specific probes for complete coverage in large scale bacteria detection, Progress in Biochemistry and Biophysics, 2009, 36(8): 1025~1034.

• Wenjie Shu, Xiaochen Bo*, Zhiqiang Zheng and Shengqi Wang*. In silico genetic robustness analysis of secondary structural elements within microRNA. Journal of Molecular Evolution, 2008, 67: 560-569.

• Wenjie Shu, Xiaochen Bo*, Zhiqiang Zheng and Shengqi Wang*. A novel representation of RNA secondary structure based on element-contact graphs. BMC Bioinformatics, 2008, 9(1):188.

• Wenjie Shu†, Xiaochen Bo†*, Ming Ni, Zhiqiang Zheng and Shengqi Wang*. In silico genetic robustness analysis of microRNA secondary structures: potential evidence of congruent evolution in microRNA. BMC Evolutionary Biology, 2007, 7:223.

• Wenjie Shu†, Xiaochen Bo†*, Zhiqiang Zheng, Shengqi Wang*. RSRE: RNA structural robustness evaluator. Nucleic Acids Research, 2007, W314-319.

• Wenjie Shu†, Xiaochen Bo†*, Rujia Liu, Dongsheng Zhao, Zhiqiang Zheng, Shengqi Wang*. RDMAS: A web server for RNA deleterious mutation analysis. BMC Bioinformatics, 2006, 7: 404.

• Jing Yang, Xiaoran Ding, Yi Zhang, Xiaochen Bo, Minli Zhang, Shengqi Wang*. Fibronectin is essential for hepatitis B virus propagation in vitro: May be a potential cellular target? Biochemical and Biophysical Research Communications, 2006, 344(3):757-64.

• Xiaochen Bo†, Shaoke Lou†, Daochun Sun†, Jing Yang, Shengqi Wang*. AOBase: A database for antisense oligonucleotides selection and design. Nucleic Acids Research, 2006, Vol. 34, D665

• Xiaochen Bo, Shaoke Lou, Daochun Sun, Jing Yang, Shengqi Wang*. Computational selection of antisense oligonucleotides based on multiple predicted target structures. BMC Bioinformatics, 2006, 7: 122.

• Yang Jing, Bo Xiaochen, Ding Xiaoran, Wang Shengqi*. Antisense oligonucleotides targeted against asialoglucoprotein recaptor (ASGPR) block human hepatitis B virus replication. Journal of Viral Hepatitis, 2006, 13(3): 158-165.

• Shi-Meng Zhang, Xiao-chen Bo, Sheng-Qi Wang*. HBx protein of hepatitis B virus (HBV) can form ternary complex with mitochondrial HSP60 and HSP70. Archives of virology, 2005, 150(8): 1579-1590..

• Yang Jing, Bo Xiaochen, Zhang Yi, Yao Jun, Yang Ningmin, Wang Shengqi*. Screening of genes response to HBV infection for the discovery of potential targets of anti-HBV drugs. Journal of Viral Hepatitis, 2005, 12(4): 357-363.

• Xiaochen Bo, Shengqi Wang*. TargetFinder: A software for antisense oligonucleotides target sites selection based on MAST and secondary structures of target mRNA. Bioinformatics, 2005, 21(8): 1401-1402.

• Yi Zhang, Xiao-Chen Bo, JingYang, Sheng-Qi Wang*. HBVPathDB：A database of HBV infection related molecular interaction network. World Journal of Gastroenterology, 2005, 11(11): 1690-1692.

DataBases

• AOBase: A database for antisense oligonucleotides selection and design

Softwares

• TargetFinder: A software for antisense oligonucleotides target sites selection

• RDMAS: A web server for RNA deleterious mutation analysis

• RSRE: RNA structural robustness evaluator